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Carbon and Organic Compounds: Structure, Properties, and Health Implications - Prof. Maria, Study notes of Biology

The role of carbon in forming organic compounds through covalent bonds, the unique properties of organic compounds based on their carbon skeleton and attached groups, and the health implications of certain polysaccharides and steroids. Topics include methane, hydrocarbons, petroleum, glycogen, diabetes, cellulose, and steroids.

Typology: Study notes

Pre 2010

Uploaded on 12/12/2009

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Organic compounds
Nearly all the molecules a cell makes are
Carbon-based (= organic compounds)
Carbon is unparalleled in its ability to form
large, diverse molecules
The outer electron shell of Carbon has 4
electrons
Carbon completes its outer shell by sharing
electrons with other atoms (Carbon and other
elements) in 4 covalent bonds
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Organic compounds

  • (^) Nearly all the molecules a cell makes are Carbon-based (= organic compounds )
  • (^) Carbon is unparalleled in its ability to form large, diverse molecules
  • (^) The outer electron shell of Carbon has 4 electrons
  • (^) Carbon completes its outer shell by sharing electrons with other atoms (Carbon and other elements) in 4 covalent bonds

Organic Compounds

  • (^) By sharing its electrons, Carbon can bond to four other atoms
  • (^) By doing so, it can branch in up to four directions, enabling the formation of diverse compounds
  • (^) Methane, CH 4 is one of the simplest organic compounds (1 Carbon atom shares its electrons with 4 Hydrogen atoms) http://creativecommons.org/licenses/by-sa/2.5/

Organic compounds

  • (^) The unique properties of an organic compound depend on the size and shape of its Carbon skeleton (the chain of Carbon atoms, can be branched or unbranched) and on the groups of atoms that are attached to that skeleton http://en.wikipedia.org/wiki/Carbon_skeleton#Carbon_skeleton

Carbon skeletons vary in length. Branching. Skeletons may be unbranched or branched. Butane Isobutane Ethane Propane Double bonds. 2-Butene Skeletons may have double bonds, which can vary in location. Cyclohexane Length. 1-Butene Benzene Rings. Skeletons may be arranged in rings.

Hydroxyl grouppolar , consists of a Hydrogen bonded to an Oxygen Carbonyl grouppolar , Carbon linked by a double bond to an Oxygen Carboxyl grouppolar , a Carbon double-bonded to both an Oxygen and a Hydroxyl group Amino grouppolar , composed of a Nitrogen bonded to 2 Hydrogen atoms and the Carbon skeleton Phosphate grouppolar , consists of a Phosphorus atom bonded to 4 Oxygen atoms Methyl groupnonpolar and not reactive ,Carbon bonded to 3 Hydrogen

Organic Compounds

  • (^) Isn’t organic chemistry fun???!!! How about a working example….
  • (^) Male and female sex hormones differ ONLY by functional group
  • (^) This change in functional group may seem subtle, but results in different actions of these molecules, which help produce the physical features (characteristics) of males and females

Organic Chemistry is great!

  • (^) In addition to water, all other biological molecules are organic (carbon-based) molecules
  • (^) There are many organic molecules, but four of them are extremely important: - (^) Carbohydrates - (^) Lipids - (^) Proteins - (^) Nucleic Acids

Polymers

  • (^) Cells make most of their large molecules by joining smaller molecules into chains called polymers
  • (^) A polymer is a ‘macromolecule’ because of its great size
  • (^) Polymers consist of many identical or similar building blocks (monomers) strung together, much like a long train consists of many individual cars

Polymers

  • (^) The key to the great diversity of proteins and DNA is arrangement – the variation in the sequence in which monomers are strung together
  • (^) DNA is built of only four monomers (nucleotides) and proteins are built from only 20 kinds of amino acids; both of which are incredibly diverse: the proteins in you and a fungus are made with the same 20 amino acids

Polymers

  • (^) A cell links monomers together to form polymers by a dehydration reaction (a reaction that removes a molecule of water)
  • (^) An unlinked monomer has a hydroxyl group (---OH) at one end, and a hydrogen atom (--- H) at the other end
  • (^) For each monomer added to the chain, a water molecule is removed

Dehydration Reaction

Hydrolysis

  • (^) Just as removing a water molecule builds a polymer, the addition of a water molecule breaks a polymer chain
  • (^) Cells frequently must break down polymers because they are otherwise too large to enter the cell

Enzymes

  • (^) Both dehydration reactions and hydrolysis require the help of enzymes to make and break bonds
  • (^) Enzymes are specialized ‘macromolecules’ that speed up the chemical reactions in cells
  • (^) Enzymes are extremely important – without them, many reactions cannot take place. If you lack lactase, you cannot hydrolyze the bond in lactose

Carbohydrates

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