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Module 3 Lesson 6: Enzyme Kinetics, Study notes of Biochemistry

Enzyme kinetics is the study of the rates at which enzyme-catalyzed reactions occur. It focuses on how different conditions affect the speed of enzymatic reactions, particularly substrate concentration, enzyme concentration, temperature, and pH. A key concept is the Michaelis-Menten equation, which relates reaction rate to substrate concentration using two constants: Vmax (maximum rate) and Km (Michaelis constant, indicating substrate affinity). Enzyme inhibitors—competitive, noncompetitive, and uncompetitive—affect enzyme activity by altering substrate binding or enzyme function. Enzyme kinetics is crucial for understanding metabolism, drug action, and enzyme regulation.

Typology: Study notes

2022/2023

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Enzyme
substrate
complex
kinetics
study
of
the
rate
of
reactant
compounds
,
-
-
y
-
-
-
-
-
Mita
's
"
/
COBB
.
-
substrate
§
Rate
of
enzymatic
reaction
Is
affected
by
:
£
enzyme
-1
substrate
Tv
"
-
-
-
"
¥+1929m
Act
'
"e_N
Site
/
enzyme
+
product
Enzyme
,
Substrate
,
Effectors
and
Temperature
¥
-
Gaggi
_⑨↑,ja
En!g*
C)
Ki
gress
-
E-
+
SEES
Reasons
for
studying
:
K
,
Enzyme
(E)
combines
with
its
substrate
to
form
an
enzyme
substrate
(
ES
)
complex
in
a
fast
reversible
step
:
Quantitative
description
of
biocatalysts
,
Determines
ES
complex
then
breaks
down
/
na
slower
second
step
-10
yield
the
-
free
enzyme
and
the
reaction
product
CP
)
Kz
Order
of
binding
of
substrates
.
Elucidate
acid-base
Es󲰛EtP
Effect
Of
Substrate
Concentration
On
Reaction
Rate
kz
catalysis
.
Understand
catalytic
mechanism
,
find
A.
B.
-
-
-
-
-1m¥
-
=
-
-
effective
inhibitors
and
understand
regulation
of
activity
§É
"
Maximum
Velocity
(
Vmax
)
É"
÷÷±÷÷÷÷÷
¥
.
.
Substrate
concentration
CS
)
,
(
mM
)
c.
E-
_É%E¥¥
?
i
É
-
T.tl/ ma x
km
[
s
]cmM
)
Time
§É,_
󲰛
;
I
[
S
]=
substrate
concentration
'
Vmax
-_
maximum
velocity
km
[
SJCMM
)
i
vo=im+ia
/
velocity
Michaelis
-
Menten
Equation
Km
-
_
Michaels
constant
km
[
STCMM
)
Rate-limiting
step
in
enzymatic
reactions
Is
the
breakdown
of
ES
step
I
Rate
of
formation
and
breakdown
of
ES
;
governed
complex
-10
product
and
free
enzyme
by
rate
constants
K
,
(
[
F-
+
]
-
[
ES
]
)[
S
]
K
-
I
[
Es
]
-114
>
[
ES
]
Early
reaction
concentration
of
product
is
negligible
;
-
simplifying
assumption
made
step
>
Rate
of
formation
and
breakdown
's
equal
>
steady-state
(
p
-7s
can
be
ignored
)
ASSUMPTION
K
,
(
[
E-
+
]
-
[
ES
]
)[
57=14
_
,
[
ES
]
-1142
[
ES
]
KI
>
turnover
#
show
many
substrate
molecules
one
Reaction
reduces
-10
:
K
,
enzyme
molecule
can
convert
per
C-
+
SEES
_>E+P
Step
3
Algebraically
solve
for
[
ES
]
and
define
Micheal
's
constant
,
kmas
(
Kitkz
)
/
ki
second
K
,
K
,
[
E
,
]
[
5
]
-
k
,
[
ESTES
]
=
(
K
.
,
-114
,
)[
ES
]
K
,[E+][
S
]
:(
K
,
[
s
]
-1K
,
,
-1K
,
)
[
ES
]
to
determined
by
breakdown
of
Esto
form
product
as
]=Y
.im?Y-s,--E5---:?.?-.ia.L-cess=I#--?E+?a.
(
determined
by
ES
;Vo=k z[
ES
]
)
step
4
Express
llointermsof
[
ES
]
and
simplify
Not
easily
measured
;
alternative
expression
[
Eg
]
=
[
E+
]
[
S
]
"
0=142
[
Es
]
Yma×=K z[
Et
]
yo
=
Vma÷
}
󲰜
]
"
=
"
2
]
[
Et
]
Represents
the
total
enzyme
concentration
(
sum
of
free
and
substrate
bound
enzyme
introduced
)
Kinetic
Parameters
Free
/
Unbound
enzyme
[
E)
=
[
Et
]
-
[
ES
]
Nonlinear
Michaelis
-
Menten
plot
calculates
km
+
Vmax
[
5)
Is
>
[
Et
]
;
amount
of
substrate
bound
by
the
enzyme
is
negligible
compared
Max
velocity
(
Vmax
)
Enzyme
Efficiency
to
the
total
[
S
]
Limited
by
speolfity
:Kca+
/
K.ms?Kca+=Kz
§¥É
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
°
"
Diffusion
from
active
site
limits
maximum
value
for
specificity
Gain
efficiency
by
having
high
velocity
/
affinity
for
substrate
(
Vous
[
s
]
)
;
approaches
Vmax
at
high
[
s
]
I
catalase
us
acetylcholinesterase
"
"
¥×
cannot
accurately
determine
Vmax
/
km
1
'
from
nonlinear
graphs
Enzymes
:
Keat
/
Km
close
-10
Diffusion
-
controlled
Limit
Clio
-1010
'M
's
-5
K"
M
[
SJLMM
)
kmcs
-1
,
kcatlkm
Derived
by
the
reciprocal
of
both
sides
Enzyme
substrate
Kcatcs
"
)
(
M
-151
)
+
Acetylcholine sterase
Acetylcholine
1.4×104
9×10-5
1.6×108
I
/
V0
=
Km
/
Vmax
[
S
]
-11
/
Vmax
coz
1×106
1.2×10-2
8.3×107
Carbonic
anhydrase
Hoo
,
-
4×105
2.6×10-2
1.5×107
¥
Catalase
1-1202
4×10
>
1.1×100
4×10
?
I
/
Vous
l
/
[
S
]
=
straight
line
Crotonase
Crotonyl
-
CoA
5.7×103
2×10-5
2.8×108
£
-
(
Fumarate
8×102
5×10-6
1.6×108
"
'
Mara
"
Malate
9×102
2.5×10-5
3.6×107
Y
Intercept
-71/11
Max
B-
Lactamase
Benzyl
penicillin
2.0×103
2×10-5
1×108
Intercept
-3
-11km

Partial preview of the text

Download Module 3 Lesson 6: Enzyme Kinetics and more Study notes Biochemistry in PDF only on Docsity!

Enzyme

substrate

complex

kinetics

study

of the

rate of

reactant

compounds

y

          • Mita

's

"

COBB

.

substrate

§

Rate of

enzymatic

reaction Is

affected

by

enzyme

substrate

Tv


"

¥+1929m

Act'

"e_N

Site

/ enzyme

  • product

Enzyme ,

Substrate

,

Effectors and

Temperature

¥ -

Gaggi _⑨↑,j☐a

En!g*

C)

Ki

gress

E- +

SEES

Reasons for

studying

K

Enzyme

(E) combines with its

substrate to

form an enzyme

substrate

(ES) complex

in a fast reversible step :

Quantitative

description

of

biocatalysts

,

Determines

ES complex then

breaks

down / na

slower second step

yield

the

free

enzyme

and the reaction

product CP)

Kz

Order of

binding

of substrates

.

Elucidate acid-base

Es EtP

Effect Of Substrate Concentration On Reaction Rate kz

catalysis

. Understand

catalytic

mechanism

,

find

A. B.


- -1m¥ - = - - 

effective inhibitors and understand

regulation

of

activity

§É

"

Maximum

Velocity

(Vmax

É"

÷÷±÷÷÷÷÷

¥

.

Substrate concentration

CS)

,

(mM )

c.

E-

_É%E¥¥

i

É

T.tl/max

km

[s]cmM

Time

§É,_

I

[S]= substrate concentration

'

Vmax-_ maximum

velocity

km

[SJCMM)

i vo=im+ia/ velocity Michaelis

  • Menten

Equation

Km

_

Michaels constant

km

[STCMM)

Rate-limiting

step

in

enzymatic

reactions

Is the breakdown of ES

step

I → Rate of formation and breakdown of ES

; governed complex -10 product

and

free

enzyme

by

rate constants

K

,

( [

F-

+]

[ES])[S]

K

I [Es]

[ ES]

Early

reaction →

concentration

of

product

is

negligible

simplifying

assumption

made

step >

Rate

of formation

and

breakdown 's

equal >

steady-state

(

p -7s can

be

ignored

)

ASSUMPTION

K

,

( [

E-

]

  • [ ES ])[ 57=14_

,

[ ES]

[ES]

KI

> turnover

show many

substrate

molecules one

Reaction reduces

K

,

enzyme

molecule

can

convert

per

C-

SEES

_>E+P

Step 3 →

Algebraically

solve for [

ES

] and define

Micheal's

constant

,

kmas

( Kitkz)

ki second

K

,

K

,

[E

,

]

[ 5 ] -

k

,

[ ESTES

]

= (K

. ,

,

)[ ES]

→ K

,[E+][

S] :(K

,

[s] -1K

, ,

-1K

,

) [ ES]

to

determined

by

breakdown of Esto form

product

as

]=Y

.im?Y-s,--E5---:?.?-.ia.L-cess=I#--?E+?a.

determined

by

ES

;Vo=kz[

ES ] )

step

4 → Express

llointermsof

[ ES ] and

simplify

Not

easily

measured

alternative

expression

[ Eg] =

[E+] [S]

[ Es]

Yma×=Kz[

Et

]

yo

=

Vma÷{§

}

]

=

2

]

→ [ Et]

Represents

the total

enzyme

concentration ( sum

of free

and substrate

bound

enzyme

introduced

Kinetic

Parameters

Free

Unbound

enzyme

[E)

=

[Et]

[ ES

]

Nonlinear Michaelis

Menten

plot

→ calculates

km

Vmax

[

5) Is >

[ Et]

amount of substrate

bound

by

the enzyme

is

negligible

compared

Max

velocity

(Vmax)

Enzyme Efficiency to the total [ S ]

Limited

by speolfity :Kca+

/ K.ms?Kca+=Kz

§¥É

"

Diffusion from active site limits maximum value for

specificity

Gain

efficiency by having

high

velocity

affinity

for substrate

( Vous

[

s])

; approaches

Vmax

at

high

[s]

I

catalase us

acetylcholinesterase

¥×

cannot

accurately

determine Vmax /

km

1

' from nonlinear

graphs

Enzymes :

Keat /

Km close -10 Diffusion

  • controlled Limit

Clio -1010'M's-

K"

M

[SJLMM)

kmcs

  • ,

kcatlkm

Derived

by

the

reciprocal

of both sides

Enzyme

substrate Kcatcs

" )

M-151)

Acetylcholinesterase Acetylcholine 1.4× 104 9 ×10-5 1.6× 108

I /

V

=

Km / Vmax

[S] -11 /

Vmax

coz 1 × 106 1.2×10-2 8.3× 107

Carbonic anhydrase Hoo ,

  • 4 × 105 2.6×10-2 1.5× 107 ¥

Catalase 1-1202 4 × 10

> 1.1× 100
4 × 10

? I

/Vous l /

[S
]

=

straight

line

Crotonase Crotonyl

  • CoA 5.7× 103
2 ×10-5 2.8× 108

Fumarate 8 × 102 5 ×10-6 1.6× 108

"'Mara

"

Malate 9 × 102 2.5×10-5 3.6× 107 Y Intercept

-71/11 Max

B-Lactamase Benzylpenicillin

2.0× 103 2 ×10-5 1 × 108

Intercept

-3 -11km