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Material Type: Lab; Professor: Munson; Class: Human Biology; Subject: Biology; University: City College of San Francisco; Term: Spring 2009;
Typology: Lab Reports
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Information for this lab is taken from BIORAD’s “Biotechnology Exploreer pGLO Bacterial Transformation Kit Catalog Number 166-0003EDU”.
Consideration 1: Gene Regulation Our bodies contain thousands of different proteins which perform many different jobs. Digestive enzymes are proteins; some of the hormone signals that run through our bodies and the antibodies protecting us from disease are proteins. The information for assembling a protein is carried in our DNA. The section of DNA which contains the code for making a protein is called a gene. There are over 30,000 – 100,000 genes in the human genome. Each gene codes for a unique protein: one gene, one protein. The gene that codes for a digestive enzyme in your mouth is different from one that codes for an antibody or the pigment that colors your eyes.
Organisms regulate expression of their genes and ultimately the amounts and kinds of proteins present within their cells for a myriad of reasons, including developmental changes, cellular specialization, and adaptation to the environment. Gene regulation not only allows for adaptation to differing conditions, but also prevents wasteful overproduction of unneeded proteins which would put the organism at a competitive disadvantage. For example, the simple sugar arabinose is both a source of energy and a source of carbon for bacteria. The bacterial genes that make digestive enzymes to break down arabinose are not expressed when arabinose is not present in the environment. When arabinose is present, these genes are turned “on”. When the arabinose runs out in the environment, the genes are turned off again.
Arabinose initiates the transcription of these genes by promoting the binding of RNA polymerase. In the genetically engineered the DNA code of the pGLO plasmid , some of the genes involved in the breakdown of arabinose have been replaced by a jellyfish gene that codes for Green Fluorescent Protein (GFP). When the bacteria that have been transformed by the pGLO plasmid are grown in arabinose, the gene encoding GFP is turned on and bacteria colonies glow brilliant green when exposed to UV light. The pGLO plasmid which contains the GFP gene also contains the gene for beta lactamase , which allows the bacteria to be resistant to the antibiotic ampicillin.
This is an excellent example of central molecular framework of biology in action: DNA RNA Protein Trait
BIO9 - Spring 2009
165
Consideration 2: Make the Link to the Real World with pGLO In this lab you will perform a procedure known as genetic transformation (the insertion of some new DNA into a host cell). Remember that a gene is a piece of DNA which provides the instructions for making (codes for) a protein. This protein gives an organism a particular trait. Genetic transformation literally means change caused by genes, and involves the insertion of a gene into an organism in order to change the organism’s traits. Genetic transformation is used in many areas of biotechnology. In agriculture, genes coding for traits such as frost, pest, or spoilage resistance can be genetically transformed into plants. In bioremediation, bacteria can be genetically transformed with genes enabling them to digest oil spills. In medicine, diseases caused by defective genes are beginning to be treated by gene therapy.
You will use a procedure to transform bacteria with a plasmid containing that codes for Green Fluorescent Protein (GFP). The real-life source of this gene is the bioluminescent jellyfish Aequorea victoria. GFP causes the jellyfish to fluoresce and glow in the dark. Following the transformation procedure under the correct growth conditions, the bacteria express their newly acquired jellyfish gene and produce the fluorescent protein, which causes them to glow a brilliant green color under ultraviolet light.
BIO9 - Spring 2009
166
Objectives
Materials Ice in small container 2 microtubes containing 50μL of competent E.coli (must be kept on ice) Poured agar plates (1 LB, 2 LB/AMP, 1 LB/AMP/ARA) 2 microtubes containing 250μL of SOC nutrient broth Microcentrifuge tube containing 5μL of pGLO plasmid DNA Inoculation loops (4) P1000 Pipetteman & P20 Pipetteman Pipette tips that fit the two different pipettemen Foam microtube holder/float Marking Pen Timer/stopwatch 42 °C water bath 37 °C water bath 37 °C incubator UV light pen Biohazard waste (shared with class)
Procedure
exactly 30 seconds