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Gene Regulations and Transformations in Biotechnology | BIO 9, Lab Reports of Human Biology

Material Type: Lab; Professor: Munson; Class: Human Biology; Subject: Biology; University: City College of San Francisco; Term: Spring 2009;

Typology: Lab Reports

Pre 2010

Uploaded on 08/16/2009

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Biotechnology & pGLO Transformation Lab
Information for this lab is taken from BIORAD’s “Biotechnology Exploreer pGLO Bacterial
Transformation Kit Catalog Number 166-0003EDU”.
Consideration 1: Gene Regulation
Our bodies contain thousands of different proteins which perform many different
jobs. Digestive enzymes are proteins; some of the hormone signals that run through our
bodies and the antibodies protecting us from disease are proteins. The information for
assembling a protein is carried in our DNA. The section of DNA which contains the
code for making a protein is called a gene. There are over 30,000 – 100,000 genes in the
human genome. Each gene codes for a unique protein: one gene, one protein. The gene
that codes for a digestive enzyme in your mouth is different from one that codes for an
antibody or the pigment that colors your eyes.
Organisms regulate expression of their genes and ultimately the amounts and
kinds of proteins present within their cells for a myriad of reasons, including
developmental changes, cellular specialization, and adaptation to the environment. Gene
regulation not only allows for adaptation to differing conditions, but also prevents
wasteful overproduction of unneeded proteins which would put the organism at a
competitive disadvantage. For example, the simple sugar arabinose is both a source of
energy and a source of carbon for bacteria. The bacterial genes that make digestive
enzymes to break down arabinose are not expressed when arabinose is not present in the
environment. When arabinose is present, these genes are turned “on”. When the
arabinose runs out in the environment, the genes are turned off again.
Arabinose initiates the transcription of these genes by promoting the binding of
RNA polymerase. In the genetically engineered the DNA code of the pGLO plasmid,
some of the genes involved in the breakdown of arabinose have been replaced by a
jellyfish gene that codes for Green Fluorescent Protein (GFP). When the bacteria that
have been transformed by the pGLO plasmid are grown in arabinose, the gene encoding
GFP is turned on and bacteria colonies glow brilliant green when exposed to UV light.
The pGLO plasmid which contains the GFP gene also contains the gene for beta
lactamase, which allows the bacteria to be resistant to the antibiotic ampicillin.
This is an excellent example of central molecular framework of biology in action:
DNA
RNA
Protein
Trait
BIO9 - Spring 2009
165
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Biotechnology & pGLO Transformation Lab

Information for this lab is taken from BIORAD’s “Biotechnology Exploreer pGLO Bacterial Transformation Kit Catalog Number 166-0003EDU”.

Consideration 1: Gene Regulation Our bodies contain thousands of different proteins which perform many different jobs. Digestive enzymes are proteins; some of the hormone signals that run through our bodies and the antibodies protecting us from disease are proteins. The information for assembling a protein is carried in our DNA. The section of DNA which contains the code for making a protein is called a gene. There are over 30,000 – 100,000 genes in the human genome. Each gene codes for a unique protein: one gene, one protein. The gene that codes for a digestive enzyme in your mouth is different from one that codes for an antibody or the pigment that colors your eyes.

Organisms regulate expression of their genes and ultimately the amounts and kinds of proteins present within their cells for a myriad of reasons, including developmental changes, cellular specialization, and adaptation to the environment. Gene regulation not only allows for adaptation to differing conditions, but also prevents wasteful overproduction of unneeded proteins which would put the organism at a competitive disadvantage. For example, the simple sugar arabinose is both a source of energy and a source of carbon for bacteria. The bacterial genes that make digestive enzymes to break down arabinose are not expressed when arabinose is not present in the environment. When arabinose is present, these genes are turned “on”. When the arabinose runs out in the environment, the genes are turned off again.

Arabinose initiates the transcription of these genes by promoting the binding of RNA polymerase. In the genetically engineered the DNA code of the pGLO plasmid , some of the genes involved in the breakdown of arabinose have been replaced by a jellyfish gene that codes for Green Fluorescent Protein (GFP). When the bacteria that have been transformed by the pGLO plasmid are grown in arabinose, the gene encoding GFP is turned on and bacteria colonies glow brilliant green when exposed to UV light. The pGLO plasmid which contains the GFP gene also contains the gene for beta lactamase , which allows the bacteria to be resistant to the antibiotic ampicillin.

This is an excellent example of central molecular framework of biology in action: DNA  RNA  Protein  Trait

BIO9 - Spring 2009

165

Consideration 2: Make the Link to the Real World with pGLO In this lab you will perform a procedure known as genetic transformation (the insertion of some new DNA into a host cell). Remember that a gene is a piece of DNA which provides the instructions for making (codes for) a protein. This protein gives an organism a particular trait. Genetic transformation literally means change caused by genes, and involves the insertion of a gene into an organism in order to change the organism’s traits. Genetic transformation is used in many areas of biotechnology. In agriculture, genes coding for traits such as frost, pest, or spoilage resistance can be genetically transformed into plants. In bioremediation, bacteria can be genetically transformed with genes enabling them to digest oil spills. In medicine, diseases caused by defective genes are beginning to be treated by gene therapy.

You will use a procedure to transform bacteria with a plasmid containing that codes for Green Fluorescent Protein (GFP). The real-life source of this gene is the bioluminescent jellyfish Aequorea victoria. GFP causes the jellyfish to fluoresce and glow in the dark. Following the transformation procedure under the correct growth conditions, the bacteria express their newly acquired jellyfish gene and produce the fluorescent protein, which causes them to glow a brilliant green color under ultraviolet light.

BIO9 - Spring 2009

166

pGLO Procedure

Objectives

  • To understand one of the most commonly used techniques for introducing DNA into E. coli cells and its use in molecular cloning.
  • To become familiar with the concept of using green fluorescent protein (GFP) as a molecular tag for studying gene expression in bacteria and other organisms.
  • To observe how the environment can regulate gene expression

Materials Ice in small container 2 microtubes containing 50μL of competent E.coli (must be kept on ice) Poured agar plates (1 LB, 2 LB/AMP, 1 LB/AMP/ARA) 2 microtubes containing 250μL of SOC nutrient broth Microcentrifuge tube containing 5μL of pGLO plasmid DNA Inoculation loops (4) P1000 Pipetteman & P20 Pipetteman Pipette tips that fit the two different pipettemen Foam microtube holder/float Marking Pen Timer/stopwatch 42 °C water bath 37 °C water bath 37 °C incubator UV light pen Biohazard waste (shared with class)

Procedure

  1. Read through procedure completely and gather all materials.
  2. Thaw competent E.coli on ice (do not thaw with hands or attempt to speed up the thawing process).

3. Label one closed microtube containing E.coli +pGLO (i.e. positive) and the other microtube –

pGLO (i.e. negative).

  1. Examine the two tubes by exposing them to UV light. Do they glow?
  2. Examine the container of plasmid DNA by exposing it to UV light. Does it glow?

6. Add 5μL of pGLO plasmid to the +pGLO tube. AND ONLY the +pGLO tube.

  1. Gently flick the tube and replace it on ice. The tubes will incubate on ice for 10 minutes.
  2. While the tubes are incubating, label the 4 agar plates: a. LB ‐ labeled negative b. LB/AMP – one labeled negative, one labeled positive c. LB/AMP/ARA – labeled positive

pGLO Procedure

9. After 10 minutes take both +pGLO and – pGLO tubes and place in 42°C water bath for

exactly 30 seconds

  1. After 30 seconds place both tubes back on ice for about 1 minute.
  2. Add 250μL SOC medium to each tube (remember to use a new pipette tip for each tube).
  3. Place tubes into the foam floater and incubate in 37°C water bath for about 45‐60 minutes.
  4. After the incubation period, pipette 100μL of the contents of each tube onto the surface of the appropriate plate.
  5. Spread the liquid over the surface of the plate gently using the inoculation loops. Use a clean inoculation loop for each plate
  6. Expose each plate to UV light. Do they glow?
  7. Place plates “upside down” and tape all four plates together.
  8. Give to instructor to incubate overnight at 37°C.
  9. Dispose of anything that has bacteria on it in the biohazard waste bin. Dump excess ice in sink. Place all materials neatly back on tray and place the tray back on lab cart.
  10. The next time the class meets, expose each plate to UV light, observe & record results.

42 ° C for 30 seconds